PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 451aa    MW: 48002.4 Da    PI: 10.0289
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Csa06g024700.1 60 FVCEICNKGFQRDQNLQLHRRGH 82
                    89*******************88 PP

2zf-C2H211.40.00099136158123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  Csa06g024700.1 136 WKCDKCSKKYAVQSDWKAHSKIC 158
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.82E-75982No hitNo description
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PfamPF121717.0E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355280101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.82E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
DLDNSSTVSG EASVSISSTG NQNPLINSTG KKKRNLPGMP DPESEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ KSSKEVRKKV YVCPEVSCVH HEPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT KEYKCDCGTL FSRRDSFITH  180
RAFCDALAEE SARSNNHSQS KKQSPEISTR KKPVRDPIPA PVDTESAKVK SSSTLTIKQS  240
ESPKPPPDIV QEVPKPTGLN VTRNGVFAGL FESSTASPSI YTTSSSSKSL FAPSSSIEPT  300
SLGLSTGHGS SFLGLNRFQA QPAMSATALL QKAAQLGAAS SGGSLLRGLG IISSSSSSMD  360
AIVPHGLGLG LPCGGESSSG LKELMMWNSS VFCPKQTTLD FLGLGRAVGN GNGPINGLSA  420
LVGGSSGIDM ATAFESGEFS SGKDISRRKS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18698KLRQKSSKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269330.0AK226933.1 Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08.
GenBankBT0149470.0BT014947.1 Arabidopsis thaliana At3g50700 gene, complete cds.
GenBankBT0158360.0BT015836.1 Arabidopsis thaliana At3g50700 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426610.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLR0HJI70.0R0HJI7_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__1410__AT3G50700.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2